Karl Jones: /* External links */

2016-04-27T16:30:34Z

‎External links

Karl Jones at 15:34, 2 January 2016

2016-01-02T15:34:47Z

Karl Jones: /* See also */

2015-09-15T18:35:04Z

‎See also

Karl Jones: Created page with "The '''Scientific Computing and Imaging Institute (SCI)''' is a research institute located on the University of Utah campus in Salt Lake City, Utah. (TO DO: expand, o..."

2015-09-15T18:13:27Z

Created page with "The '''Scientific Computing and Imaging Institute (SCI)''' is a research institute located on the University of Utah campus in Salt Lake City, Utah. (TO DO: expand, o..."

New page

The '''Scientific Computing and Imaging Institute (SCI)''' is a research institute located on the [[University of Utah]] campus in [[Salt Lake City, Utah]].

(TO DO: expand, organize, cross-reference, illustrate.)

== Description ==

Its objective is to create new [[scientific computing]] techniques, tools, and systems with applications to various fields, including:

* [[High performance computing]]
* [[Scientific visualization]]
* [[Image analysis]]
* [[Computational biology]]
* [[Data science]]
* [[Graphics]]

== Open source software releases ==

Besides research in the areas mentioned above, a particular focus of SCI has been to develop innovative and robust software packages, and release them as [[open source|open-source software]].

The latest releases and source code lives on [https://github.com/SCIInstitute Github].

Examples:

* [http://www.scirun.org SCIRun], a Problem Solving Environment (PSE), for modeling, simulation and visualization of scientific problems.
* [http://www.biomesh3d.org BioMesh3D], a tetrahedral [[mesh generation|mesh generator]], that is capable of generating multi-material quality meshes out of segmented biomedical image data.
* [http://www.seg3d.org Seg3D], an interactive [[segmentation|image segmentation]] tool.
* [[ImageVis3D]], a lightweight, feature-rich [[volume rendering]] application.
* [https://visus.us/ Visus], Visualization Streams for Ultimate Scalability.
* [http://www.sci.utah.edu/software/shapeworks.html ShapeWorks], a new method for constructing compact statistical point-based models of ensembles of similar shapes that does not rely on any specific [[surface parameterisation|surface parameterization]].
* [http://www.sci.utah.edu/software/map3d.html map3d], a scientific visualization application written to display and edit three-dimensional geometric models and scalar time-based data associated with those models.
* [http://www.sci.utah.edu/software/uintah.html Uintah], a set of software components and libraries that facilitate the solution of [[partial differential equations]] on structured adaptive mesh refinement grids using hundreds to thousands of processors.
* [http://www.sci.utah.edu/software/fiberviewer.html FiberViewer], a comprehensive, integrated, open-source environment for medical image visualization and analysis.
* [http://www.sci.utah.edu/software/atlaswerks.html AtlasWerks], an open-source (BSD license) software package for medical image [[texture atlas|atlas]] generation.
* [http://www.sci.utah.edu/software/ncr-toolset.html NCR Toolset], a collection of software tools for the reconstruction and visualization of [[neural circuitry]] from [[electron microscopy]] data.
* [http://www.fluorender.org FluoRender], an interactive rendering tool for [[confocal microscopy]] data visualization.
* [http://www.sci.utah.edu/software/elvis.html ElVis], a visualization system created for the accurate and interactive visualization of scalar fields produced by high-order spectral/hp [[finite element]] simulations.
* [[VisTrails]], a [[scientific workflow system|scientific workflow management system]].
* [http://www.sci.utah.edu/software/afront.html Afront], a tool for meshing and remeshing surfaces.
* [http://www.sci.utah.edu/software/cleaver.html Cleaver], A MultiMaterial Tetrahedral Meshing API and Application.
* [http://www.sci.utah.edu/software/epicanvas.html EpiCanvas], Infectious Disease Weather Map.
* [http://www.febio.org FEBio], is a nonlinear finite element solver that is specifically designed for biomechanical applications.
* [http://www.febio.org/software/preview PreView], a Finite Element (FE) [[preprocessor|pre-processor]] that has been designed specifically to set up FE problems for FEBio
* [http://www.febio.org/software/postview PostView], a Finite Element (FE) [[finite element model data post-processing|post-processor]] that is designed to post-process the results from FEBio.
* [http://www.sci.utah.edu/bisti.html STCR], a [[MATLAB]]-based program to reconstruct undersampled DCE radial data, with [[compressed sensing]] methods.
* [http://www.sci.utah.edu/software/exoshapeaccel.html ExoshapeAccel], a C/C++ application for estimating continuous evolution from a discrete collection of shapes, designed to produce realistic anatomical trajectories.
* [http://www.sci.utah.edu/software/vispack.html VISPACK], a C++ library that includes matrix, image, and volume objects.
* [http://www.sci.utah.edu/software/teem.html Teem], a collection of libraries for representing, processing, and visualizing scientific [[raster data]].

== See also ==

* [[Computational biology]]
* [[Data science]]
* [[Graphics]]
* [[High performance computing]]
* [[Image analysis]]
* [[MATLAB]]
* [[Raster data]]
* [[Scientific computing]]
* [[Scientific visualization]]
* [[Signal processing]]
* [[Uncertainty quantification]]

== External links ==

* [https://www.sci.utah.edu/ Official website]
* [https://en.wikipedia.org/wiki/Scientific_Computing_and_Imaging_Institute Scientific Computing and Imaging Institute] @ Wikipedia

← Older revision		Revision as of 16:30, 27 April 2016
Line 64:		Line 64:
	* [https://www.sci.utah.edu/ Official website]		* [https://www.sci.utah.edu/ Official website]
	* [https://en.wikipedia.org/wiki/Scientific_Computing_and_Imaging_Institute Scientific Computing and Imaging Institute] @ Wikipedia		* [https://en.wikipedia.org/wiki/Scientific_Computing_and_Imaging_Institute Scientific Computing and Imaging Institute] @ Wikipedia
		+
		+
		+	[[Category:Computing]]
		+	[[Category:Computer graphics]]
		+	[[Category:Institutions]]
		+	[[Category:Visual arts]]

← Older revision		Revision as of 15:34, 2 January 2016
Line 1:		Line 1:
	The '''Scientific Computing and Imaging Institute (SCI)''' is a research institute located on the [[University of Utah]] campus in [[Salt Lake City, Utah]].		The '''Scientific Computing and Imaging Institute (SCI)''' is a research institute located on the [[University of Utah]] campus in [[Salt Lake City, Utah]].
−
−	~~(TO DO: expand, organize, cross-reference, illustrate.)~~

	== Description ==		== Description ==

@@ Line 50: / Line 50: @@
 * [[Computational biology]]
 * [[Data science]]
 * [[Graphics]]

Scientific Computing and Imaging Institute - Revision history

Karl Jones: /* External links */

Karl Jones at 15:34, 2 January 2016

Karl Jones: /* See also */

Karl Jones: Created page with "The '''Scientific Computing and Imaging Institute (SCI)''' is a research institute located on the University of Utah campus in Salt Lake City, Utah. (TO DO: expand, o..."